Package: chemodiv 0.3.0.9000

chemodiv: Analysing Chemodiversity of Phytochemical Data

Quantify and visualise various measures of chemical diversity and dissimilarity, for phytochemical compounds and other sets of chemical composition data. Importantly, these measures can incorporate biosynthetic and/or structural properties of the chemical compounds, resulting in a more comprehensive quantification of diversity and dissimilarity. For details, see Petrén, Köllner and Junker (2023) <doi:10.1111/nph.18685>.

Authors:Hampus Petrén [aut, cre], Tobias G. Köllner [aut], Robert R. Junker [aut]

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NEWS

# Install 'chemodiv' in R:
install.packages('chemodiv', repos = c('https://hpetren.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/hpetren/chemodiv/issues

Datasets:

On CRAN:

4.51 score 5 stars 13 scripts 346 downloads 11 exports 156 dependencies

Last updated 1 years agofrom:77a5f193e2. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 13 2024
R-4.5-winOKNov 13 2024
R-4.5-linuxOKNov 13 2024
R-4.4-winOKNov 13 2024
R-4.4-macOKNov 13 2024
R-4.3-winOKNov 13 2024
R-4.3-macOKNov 13 2024

Exports:calcBetaDivcalcDivcalcDivProfchemoDivCheckchemoDivPlotcompDismolNetmolNetPlotNPCTablequickChemoDivsampDis

Dependencies:abindade4apeaskpassbase64encBHBiocGenericsbitopsbslibcachemChemmineRcliclueclusterclusterGenerationcodacodetoolscolorspacecombinatcpp11crosstalkcurldata.treeDBIDEoptimdeSolvedigestdirmultdoParalleldplyrDTevaluateexpmfansifarverfastmapfastmatchfBasicsFDfmcsRfontawesomeforeachfsgeigergenericsgeometryggdendroggforceggplot2ggraphggrepelgluegraphlayoutsgridExtragssgtableGUniFrachighrhillRhtmltoolshtmlwidgetshttpuvhttrigraphinlineisobanditeratorsjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclelinproglpSolvemagicmagrittrmapsMASSMatrixmatrixStatsmemoisemgcvmimemnormtmodeestmunsellmvtnormncbitnlmenumDerivopenssloptimParallelpermutephangornphytoolspillarpixmappkgconfigplyrpngpolyclippromisespurrrquadprogR6rappdirsRColorBrewerRcppRcppArmadilloRcppEigenRcppProgressRCurlrjsonrlangrmarkdownrmutilrpartrsvgRUnitrvestsassscalesscatterplot3dselectrspspatialstablestablediststatipstatmodstringistringrsubplexsyssystemfontstibbletidygraphtidyrtidyselecttimeDatetimeSeriestinytextweenrutf8vctrsveganviridisviridisLitewebchemwithrxfunxml2yaml

Analysing Phytochemical Diversity -- an introduction to chemodiv

Hampus Petrén^1^, Tobias G. Köllner^2^, Robert R. Junker^1,3^

Rendered fromchemodiv-vignette.Rmdusingknitr::rmarkdownon Nov 13 2024.

Last update: 2023-08-17
Started: 2022-05-18