Package: chemodiv 0.3.0.9000

chemodiv: Analysing Chemodiversity of Phytochemical Data

Quantify and visualise various measures of chemical diversity and dissimilarity, for phytochemical compounds and other sets of chemical composition data. Importantly, these measures can incorporate biosynthetic and/or structural properties of the chemical compounds, resulting in a more comprehensive quantification of diversity and dissimilarity. For details, see Petrén, Köllner and Junker (2023) <doi:10.1111/nph.18685>.

Authors:Hampus Petrén [aut, cre], Tobias G. Köllner [aut], Robert R. Junker [aut]

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Bug tracker:https://github.com/hpetren/chemodiv/issues

On CRAN:

11 exports 5 stars 1.11 score 156 dependencies 11 scripts 354 downloads

Last updated 1 years agofrom:77a5f193e2. Checks:OK: 7. Indexed: yes.

Exports:calcBetaDivcalcDivcalcDivProfchemoDivCheckchemoDivPlotcompDismolNetmolNetPlotNPCTablequickChemoDivsampDis

Dependencies:abindade4apeaskpassbase64encBHBiocGenericsbitopsbslibcachemChemmineRcliclueclusterclusterGenerationcodacodetoolscolorspacecombinatcpp11crosstalkcurldata.treeDBIDEoptimdeSolvedigestdirmultdoParalleldplyrDTevaluateexpmfansifarverfastmapfastmatchfBasicsFDfmcsRfontawesomeforeachfsgeigergenericsgeometryggdendroggforceggplot2ggraphggrepelgluegraphlayoutsgridExtragssgtableGUniFrachighrhillRhtmltoolshtmlwidgetshttpuvhttrigraphinlineisobanditeratorsjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclelinproglpSolvemagicmagrittrmapsMASSMatrixmatrixStatsmemoisemgcvmimemnormtmodeestmunsellmvtnormncbitnlmenumDerivopenssloptimParallelpermutephangornphytoolspillarpixmappkgconfigplyrpngpolyclippromisespurrrquadprogR6rappdirsRColorBrewerRcppRcppArmadilloRcppEigenRcppProgressRCurlrjsonrlangrmarkdownrmutilrpartrsvgRUnitrvestsassscalesscatterplot3dselectrspspatialstablestablediststatipstatmodstringistringrsubplexsyssystemfontstibbletidygraphtidyrtidyselecttimeDatetimeSeriestinytextweenrutf8vctrsveganviridisviridisLitewebchemwithrxfunxml2yaml