Package: chemodiv 0.3.0.9000

chemodiv: Analysing Chemodiversity of Phytochemical Data

Quantify and visualise various measures of chemical diversity and dissimilarity, for phytochemical compounds and other sets of chemical composition data. Importantly, these measures can incorporate biosynthetic and/or structural properties of the chemical compounds, resulting in a more comprehensive quantification of diversity and dissimilarity. For details, see Petrén, Köllner and Junker (2023) <doi:10.1111/nph.18685>.

Authors:Hampus Petrén [aut, cre], Tobias G. Köllner [aut], Robert R. Junker [aut]

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NEWS

# Install 'chemodiv' in R:
install.packages('chemodiv', repos = c('https://hpetren.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/hpetren/chemodiv/issues

Datasets:

On CRAN:

Conda:

4.57 score 5 stars 15 scripts 385 downloads 11 exports 156 dependencies

Last updated 2 years agofrom:77a5f193e2. Checks:9 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 13 2025
R-4.5-winOKMar 13 2025
R-4.5-macOKMar 13 2025
R-4.5-linuxOKMar 13 2025
R-4.4-winOKMar 13 2025
R-4.4-macOKMar 13 2025
R-4.4-linuxOKMar 13 2025
R-4.3-winOKMar 13 2025
R-4.3-macOKMar 13 2025

Exports:calcBetaDivcalcDivcalcDivProfchemoDivCheckchemoDivPlotcompDismolNetmolNetPlotNPCTablequickChemoDivsampDis

Dependencies:abindade4apeaskpassbase64encBHBiocGenericsbitopsbslibcachemChemmineRcliclueclusterclusterGenerationcodacodetoolscolorspacecombinatcpp11crosstalkcurldata.treeDBIDEoptimdeSolvedigestdirmultdoParalleldplyrDTevaluateexpmfansifarverfastmapfastmatchfBasicsFDfmcsRfontawesomeforeachfsgeigergenericsgeometryggdendroggforceggplot2ggraphggrepelgluegraphlayoutsgridExtragssgtableGUniFrachighrhillRhtmltoolshtmlwidgetshttpuvhttrigraphinlineisobanditeratorsjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclelinproglpSolvemagicmagrittrmapsMASSMatrixmatrixStatsmemoisemgcvmimemnormtmodeestmunsellmvtnormncbitnlmenumDerivopenssloptimParallelpermutephangornphytoolspillarpixmappkgconfigplyrpngpolyclippromisespurrrquadprogR6rappdirsRColorBrewerRcppRcppArmadilloRcppEigenRcppProgressRCurlrjsonrlangrmarkdownrmutilrpartrsvgRUnitrvestsassscalesscatterplot3dselectrspspatialstablestablediststatipstatmodstringistringrsubplexsyssystemfontstibbletidygraphtidyrtidyselecttimeDatetimeSeriestinytextweenrutf8vctrsveganviridisviridisLitewebchemwithrxfunxml2yaml

Analysing Phytochemical Diversity -- an introduction to chemodiv

Hampus Petrén^1^, Tobias G. Köllner^2^, Robert R. Junker^1,3^

Rendered fromchemodiv-vignette.Rmdusingknitr::rmarkdownon Mar 13 2025.

Last update: 2023-08-17
Started: 2022-05-18